This is a first analysis of the COI metabarcording data from PacMAN available as of July 2024. Raw sequence data have been analyzed with the PacMAN bioinformatics pipeline and the resulting Darwin Core tables are included in this repository.

The source for this notebook is hosted at https://github.com/iobis/pacman-data-analysis.

## [1] "/home/runner/work/pacman-data-analysis/pacman-data-analysis"

Sample overview 2023

Sample overview 2024

Taxonomic composition COI 2023

Taxonomic composition COI 2024

Taxonomic composition 18S 2024

Beta diversity COI 2023

Multidimensional scaling using reads per phylum.

Multidimensional scaling using species presence / absence.

Beta diversity COI 2024

Multidimensional scaling using reads per phylum.

Multidimensional scaling using species presence / absence.

Beta diversity 18S 2024

Multidimensional scaling using reads per phylum.

## `summarise()` has grouped output by 'locationID', 'eventID',
## 'materialSampleID', 'eventType', 'decimalLongitude', 'decimalLatitude'. You can
## override using the `.groups` argument.

Multidimensional scaling using species presence / absence.

Full species list COI 2023

Full species list COI 2024

Full species list 18S 2024

Introduced species COI 2023

This is the subset of species which are listed in the World Register of Introduced Marine Species (WRiMS). These are not necessarily introduced in Fiji.

Introduced species COI 2024

This is the subset of species which are listed in the World Register of Introduced Marine Species (WRiMS). These are not necessarily introduced in Fiji.

Introduced species 18S 2024

This is the subset of species which are listed in the World Register of Introduced Marine Species (WRiMS). These are not necessarily introduced in Fiji.